owmeta.channel module

class owmeta.channel.Channel(*args, no_type_decl=False, **kwargs)

Bases: BiologyType

A biological ion channel.

defined_augment()

This fuction must return False if identifier_augment() would raise an IdentifierMissingException. Override it when defining a non-standard identifier for subclasses of DataObjects.

identifier_augment()

Override this method to define an identifier in lieu of one explicity set.

One must also override defined_augment() to return True whenever this method could return a valid identifier. IdentifierMissingException should be raised if an identifier cannot be generated by this method.

Raises

IdentifierMissingException

property appearsIn

Cell types in which the ion channel has been expressed

property description

A description of the ion channel

property expression_pattern

A pattern of expression of this cell within an organism

property gene_WB_ID

Wormbase ID of the encoding gene

property gene_class

Classification of the encoding gene

property gene_name

Name of the gene that codes for this ion channel

property model

Get experimental models of this ion channel

property models

Alias to model

property name

Ion channel’s name

property proteins

Proteins associated with this channel

property subfamily

Ion channel’s subfamily

class owmeta.channel.ExpressionPattern(*args, no_type_decl=False, **kwargs)

Bases: BiologyType

defined_augment()

This fuction must return False if identifier_augment() would raise an IdentifierMissingException. Override it when defining a non-standard identifier for subclasses of DataObjects.

identifier_augment()

Override this method to define an identifier in lieu of one explicity set.

One must also override defined_augment() to return True whenever this method could return a valid identifier. IdentifierMissingException should be raised if an identifier cannot be generated by this method.

Raises

IdentifierMissingException

property description

Natural language description of the expression pattern

property wormbaseID

Alias to wormbaseid

property wormbaseURL

The URL for the expression pattern in Wormbase

property wormbaseid

The ID for the expression pattern in Wormbase