owmeta.data_trans.neuron_data module¶
- class owmeta.data_trans.neuron_data.NeuronCSVDataSource(*args, no_type_decl=False, **kwargs)[source]¶
Bases:
DSMixin
,CSVDataSource
- BibTeX files
DatatypeProperty
Attribute:
bibtex_files
List of BibTeX files that are referenced in the csv file by entry ID
- CSV file name
DatatypeProperty
Attribute:
csv_file_name
- Header column names
DatatypeProperty
Attribute:
csv_header
- CSV field delimiter
DatatypeProperty
Attribute:
csv_field_delimiter
Default value: ,
- File name
DatatypeProperty
Attribute:
file_name
- Torrent file name
DatatypeProperty
Attribute:
torrent_file_name
- MD5 hash
DatatypeProperty
Attribute:
md5
- SHA-256 hash
DatatypeProperty
Attribute:
sha256
- SHA-512 hash
DatatypeProperty
Attribute:
sha512
- Input source
ObjectProperty
Attribute:
source
The data source that was translated into this one
- Transformation
ObjectProperty
Attribute:
transformation
Information about the transformation process that created this object
- Translation
ObjectProperty
Attribute:
translation
Information about the translation process that created this object
- Description
DatatypeProperty
Attribute:
description
Free-text describing the data source
- Parameters
- commit_op
CommitOp
,optional
The operation to use for commiting the file changes. The default is
COPY
- commit_op
- bibtex_files¶
“BibTeX files”, a
DatatypeProperty
: List of BibTeX files that are referenced in the csv file by entry ID
- class_context = owmeta_core.context.ClassContext(ident="http://schema.openworm.org/2020/07/sci/bio")¶
- BibTeX files
- class owmeta.data_trans.neuron_data.NeuronCSVDataTranslator(*args, no_type_decl=False, **kwargs)[source]¶
Bases:
DTMixin
,CSVDataTranslator
Input type(s):
NeuronCSVDataSource
Output type(s):
DataWithEvidenceDataSource
- input_type¶
alias of
NeuronCSVDataSource
- output_type¶
alias of
DataWithEvidenceDataSource
- translate(data_source)[source]¶
Notionally, this method takes one or more data sources, and translates them into some other data source that captures essentially the same information, but, possibly, in a different format. Additional sources can be passed in as well for auxiliary information which are not “translated” in their entirety into the output data source. Such auxiliarry data sources should be distinguished from the primary ones in the translation
- Parameters
- *args
Input data sources
- **kwargs
Named input data sources
- Returns
the
output
data
source
- class_context = owmeta_core.context.ClassContext(ident="http://schema.openworm.org/2020/07/sci/bio")¶