owmeta.network module¶

class owmeta.network.Network(*args, no_type_decl=False, **kwargs)[source]¶

Bases: BiologyType

A network of neurons

aneuron(name)[source]¶

Get a neuron by name.

Example:

# Grabs the representation of the neuronal network
>>> net = Worm().get_neuron_network()

# Grab a specific neuron
>>> aval = net.aneuron('AVAL')

>>> aval.type()
set([u'interneuron'])

Parameters: name – Name of a c. elegans neuron
Returns: Neuron corresponding to the name given
Return type: owmeta.neuron.Neuron

defined_augment()[source]¶: This fuction must return False if identifier_augment() would raise an IdentifierMissingException. Override it when defining a non-standard identifier for subclasses of DataObjects.

identifier_augment()[source]¶

Override this method to define an identifier in lieu of one explicity set.

One must also override defined_augment() to return True whenever this method could return a valid identifier. IdentifierMissingException should be raised if an identifier cannot be generated by this method.

Raises

IdentifierMissingException

interneurons()[source]¶

Get all interneurons

Returns: A iterable of all interneurons
Return type: iter(Neuron)

motor()[source]¶

Get all motor

Returns: A iterable of all motor neurons
Return type: iter(Neuron)

neuron_names()[source]¶

Gets the complete set of neurons’ names in this network.

Example:

# Grabs the representation of the neuronal network
>>> net = Worm().get_neuron_network()

>>> len(set(net.neuron_names()))
302
>>> set(net.neuron_names())
set(['VB4', 'PDEL', 'HSNL', 'SIBDR', ... 'RIAL', 'MCR', 'LUAL'])

sensory()[source]¶

Get all sensory neurons

Returns: A iterable of all sensory neurons
Return type: iter(Neuron)

property neuron¶: Returns a set of all Neuron objects in the network

property neurons¶: Alias to neuron

property synapse¶: Returns a set of all synapses in the network

property synapses¶: Alias to synapse

property worm¶: The worm connected to the network