Index
A
|
B
|
C
|
D
|
E
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
Y
A
aneuron() (owmeta.network.Network method)
appearsIn (owmeta.channel.Channel attribute)
author (owmeta.document.Document attribute)
author() (in module owmeta.bibtex_customizations)
B
BaseDocument (class in owmeta.document)
bibtex_to_document() (in module owmeta.bibtex)
BibTexDataSource (class in owmeta.data_trans.bibtex)
BibTexDataTranslator (class in owmeta.data_trans.bibtex)
BiologyType (class in owmeta.biology)
blast() (owmeta.cell.Cell method)
blockers (owmeta.channelworm.PatchClampExperiment attribute)
BodyWallMuscle (class in owmeta.muscle)
C
Ca_concentration (owmeta.channelworm.PatchClampExperiment attribute)
Cell (class in owmeta.cell)
cell (owmeta.channelworm.PatchClampExperiment attribute)
(owmeta.worm.Worm attribute)
cell_age (owmeta.channelworm.PatchClampExperiment attribute)
CellCmd (class in owmeta.commands.biology)
CellWormBaseCSVTranslator (class in owmeta.data_trans.wormbase)
Channel (class in owmeta.channel)
CHANNEL_RDF_TYPE (in module owmeta.channel_common)
ChannelModel (class in owmeta.channelworm)
Cl_concentration (owmeta.channelworm.PatchClampExperiment attribute)
conductance (owmeta.channelworm.ChannelModel attribute)
Connection (class in owmeta.connection)
ConnectionProperty (class in owmeta.neuron)
ConnectomeCSVDataSource (class in owmeta.data_trans.connections)
content (owmeta.neuroml.NeuroMLDocument attribute)
ContextMergeDataTranslator (class in owmeta.data_trans.context_merge)
customizations() (in module owmeta.bibtex_customizations)
D
DataWithEvidenceDataSource (class in owmeta.data_trans.data_with_evidence_ds)
date (owmeta.document.Document attribute)
defined_augment() (owmeta.channel.Channel method)
(owmeta.channel.ExpressionPattern method)
(owmeta.data_trans.wormatlas.WormAtlasCellListDataTranslation method)
(owmeta.document.Document method)
(owmeta.evidence.Evidence method)
(owmeta.network.Network method)
(owmeta.website.Website method)
(owmeta.worm.Worm method)
description (owmeta.cell.Cell attribute)
(owmeta.channel.Channel attribute)
(owmeta.channel.ExpressionPattern attribute)
divisionVolume (owmeta.cell.Cell attribute)
Document (class in owmeta.document)
document_url (owmeta.neuroml.NeuroMLDocument attribute)
DocumentContext (class in owmeta.documentContext)
DocumentContextMeta (class in owmeta.documentContext)
doi (owmeta.document.Document attribute)
doi() (in module owmeta.bibtex_customizations)
E
Evidence (class in owmeta.evidence)
evidence_for() (in module owmeta.evidence)
EvidenceDataSource (class in owmeta.data_trans.bibtex)
EvidenceError
Experiment (class in owmeta.experiment)
expression_pattern (owmeta.channel.Channel attribute)
ExpressionPattern (class in owmeta.channel)
G
gating (owmeta.channelworm.ChannelModel attribute)
gene_class (owmeta.channel.Channel attribute)
gene_name (owmeta.channel.Channel attribute)
gene_WB_ID (owmeta.channel.Channel attribute)
generate() (owmeta.my_neuroml.NeuroML class method)
get() (owmeta.command.OWMEvidence method)
(owmeta.neuron.ConnectionProperty method)
(owmeta.neuron.Neighbor method)
get_conditions() (owmeta.experiment.Experiment method)
get_data() (owmeta.plot.Plot method)
get_incidents() (owmeta.neuron.Neuron method)
get_neuron_network() (owmeta.worm.Worm method)
get_semantic_net() (owmeta.worm.Worm method)
get_terms() (owmeta.neuron.ConnectionProperty method)
(owmeta.neuron.Neighbor method)
GJ_degree() (owmeta.neuron.Neuron method)
H
HomologyChannelModel (class in owmeta.channelworm)
I
identifier_augment() (owmeta.channel.Channel method)
(owmeta.channel.ExpressionPattern method)
(owmeta.data_trans.wormatlas.WormAtlasCellListDataTranslation method)
(owmeta.document.Document method)
(owmeta.evidence.Evidence method)
(owmeta.network.Network method)
(owmeta.website.Website method)
(owmeta.worm.Worm method)
initial_voltage (owmeta.channelworm.PatchClampExperiment attribute)
innervatedBy (owmeta.muscle.Muscle attribute)
innexin (owmeta.neuron.Neuron attribute)
input_type (owmeta.data_trans.bibtex.BibTexDataTranslator attribute)
(owmeta.data_trans.neuron_data.NeuronCSVDataTranslator attribute)
(owmeta.data_trans.wormbase.CellWormBaseCSVTranslator attribute)
(owmeta.data_trans.wormbase.WormbaseIonChannelCSVTranslator attribute)
(owmeta.data_trans.wormbase.WormbaseTextMatchCSVTranslator attribute)
interneurons() (owmeta.network.Network method)
ion (owmeta.channelworm.ChannelModel attribute)
ion_channel (owmeta.channelworm.PatchClampExperiment attribute)
L
lineageName (owmeta.cell.Cell attribute)
listify() (in module owmeta.bibtex_customizations)
listify_one() (in module owmeta.bibtex_customizations)
load() (in module owmeta.bibtex)
load_from_file_named() (in module owmeta.bibtex)
loads() (in module owmeta.bibtex)
M
make_translation() (owmeta.data_trans.connections.NeuronConnectomeCSVTranslator method)
(owmeta.data_trans.connections.NeuronConnectomeSynapseClassTranslator method)
(owmeta.data_trans.wormatlas.WormAtlasCellListDataTranslator method)
membrane_capacitance (owmeta.channelworm.PatchClampExperiment attribute)
model (owmeta.channel.Channel attribute)
models (owmeta.channel.Channel attribute)
modelType (owmeta.channelworm.ChannelModel attribute)
motor() (owmeta.network.Network method)
Muscle (class in owmeta.muscle)
muscle (owmeta.worm.Worm attribute)
muscles() (owmeta.worm.Worm method)
mutants (owmeta.channelworm.PatchClampExperiment attribute)
N
name (owmeta.cell.Cell attribute)
(owmeta.channel.Channel attribute)
(owmeta.worm.Worm attribute)
Neighbor (class in owmeta.neuron)
Network (class in owmeta.network)
NeuroML (class in owmeta.my_neuroml)
NeuroMLDocument (class in owmeta.neuroml)
NeuroMLProperty (class in owmeta.neuroml)
Neuron (class in owmeta.neuron)
neuron (owmeta.network.Network attribute)
neuron_names() (owmeta.network.Network method)
neuron_network (owmeta.worm.Worm attribute)
NeuronConnectomeCSVTranslation (class in owmeta.data_trans.connections)
NeuronConnectomeCSVTranslator (class in owmeta.data_trans.connections)
NeuronConnectomeSynapseClassTranslation (class in owmeta.data_trans.connections)
NeuronConnectomeSynapseClassTranslator (class in owmeta.data_trans.connections)
NeuronCSVDataSource (class in owmeta.data_trans.neuron_data)
NeuronCSVDataTranslator (class in owmeta.data_trans.neuron_data)
neurons (owmeta.muscle.Muscle attribute)
(owmeta.network.Network attribute)
neuropeptide (owmeta.neuron.Neuron attribute)
neurotransmitter (owmeta.neuron.Neuron attribute)
note_url() (in module owmeta.bibtex_customizations)
number (owmeta.connection.Connection attribute)
O
output_type (owmeta.data_trans.bibtex.BibTexDataTranslator attribute)
(owmeta.data_trans.connections.NeuronConnectomeCSVTranslator attribute)
(owmeta.data_trans.connections.NeuronConnectomeSynapseClassTranslator attribute)
(owmeta.data_trans.context_merge.ContextMergeDataTranslator attribute)
(owmeta.data_trans.neuron_data.NeuronCSVDataTranslator attribute)
(owmeta.data_trans.wormatlas.WormAtlasCellListDataTranslator attribute)
(owmeta.data_trans.wormbase.CellWormBaseCSVTranslator attribute)
(owmeta.data_trans.wormbase.WormbaseIonChannelCSVTranslator attribute)
(owmeta.data_trans.wormbase.WormbaseTextMatchCSVTranslator attribute)
owm_data() (in module owmeta.sources)
owmeta (module)
owmeta.bibtex (module)
owmeta.bibtex_customizations (module)
owmeta.biology (module)
owmeta.cell (module)
owmeta.cell_common (module)
owmeta.channel (module)
owmeta.channel_common (module)
owmeta.channelworm (module)
owmeta.cli_hints (module)
owmeta.command (module)
owmeta.commands (module)
owmeta.commands.biology (module)
owmeta.connection (module)
owmeta.data_trans (module)
owmeta.data_trans.bibtex (module)
owmeta.data_trans.common_data (module)
owmeta.data_trans.connections (module)
owmeta.data_trans.context_merge (module)
owmeta.data_trans.data_with_evidence_ds (module)
owmeta.data_trans.neuron_data (module)
owmeta.data_trans.wormatlas (module)
owmeta.data_trans.wormbase (module)
owmeta.document (module)
owmeta.documentContext (module)
owmeta.evidence (module)
owmeta.experiment (module)
owmeta.muscle (module)
owmeta.my_neuroml (module)
owmeta.network (module)
owmeta.neuroml (module)
owmeta.neuron (module)
owmeta.plot (module)
owmeta.sources (module)
owmeta.translators (module)
owmeta.utils (module)
owmeta.website (module)
owmeta.worm (module)
owmeta.worm_common (module)
OWMEvidence (class in owmeta.command)
P
parse_bibtex_into_documents() (in module owmeta.bibtex)
patch_type (owmeta.channelworm.PatchClampExperiment attribute)
PatchClampChannelModel (class in owmeta.channelworm)
PatchClampExperiment (class in owmeta.channelworm)
pipette_solution (owmeta.channelworm.PatchClampExperiment attribute)
Plot (class in owmeta.plot)
pmid (owmeta.document.Document attribute)
post_cell (owmeta.connection.Connection attribute)
pre_cell (owmeta.connection.Connection attribute)
proteins (owmeta.channel.Channel attribute)
PubmedRetrievalException
Q
query_context() (in module owmeta.evidence)
R
receptor (owmeta.muscle.Muscle attribute)
(owmeta.neuron.Neuron attribute)
receptors (owmeta.muscle.Muscle attribute)
(owmeta.neuron.Neuron attribute)
reference (owmeta.evidence.Evidence attribute)
(owmeta.experiment.Experiment attribute)
refutes (owmeta.evidence.Evidence attribute)
S
scientific_name (owmeta.worm.Worm attribute)
sensory() (owmeta.network.Network method)
set() (owmeta.neuron.ConnectionProperty method)
(owmeta.neuron.Neighbor method)
set_data() (owmeta.plot.Plot method)
show() (owmeta.commands.biology.CellCmd method)
subfamily (owmeta.channel.Channel attribute)
supports (owmeta.evidence.Evidence attribute)
Syn_degree() (owmeta.neuron.Neuron method)
synapse (owmeta.network.Network attribute)
synapses (owmeta.network.Network attribute)
synclass (owmeta.connection.Connection attribute)
syntype (owmeta.connection.Connection attribute)
T
termination (owmeta.connection.Connection attribute)
title (owmeta.document.Document attribute)
(owmeta.website.Website attribute)
translate() (owmeta.data_trans.bibtex.BibTexDataTranslator method)
(owmeta.data_trans.connections.NeuronConnectomeCSVTranslator method)
(owmeta.data_trans.connections.NeuronConnectomeSynapseClassTranslator method)
(owmeta.data_trans.context_merge.ContextMergeDataTranslator method)
(owmeta.data_trans.neuron_data.NeuronCSVDataTranslator method)
(owmeta.data_trans.wormatlas.WormAtlasCellListDataTranslator method)
(owmeta.data_trans.wormbase.CellWormBaseCSVTranslator method)
(owmeta.data_trans.wormbase.WormbaseIonChannelCSVTranslator method)
(owmeta.data_trans.wormbase.WormbaseTextMatchCSVTranslator method)
translation_type (owmeta.data_trans.connections.NeuronConnectomeCSVTranslator attribute)
(owmeta.data_trans.connections.NeuronConnectomeSynapseClassTranslator attribute)
(owmeta.data_trans.wormatlas.WormAtlasCellListDataTranslator attribute)
type (owmeta.neuron.Neuron attribute)
U
update_from_wormbase() (owmeta.document.Document method)
uri (owmeta.document.Document attribute)
url (owmeta.website.Website attribute)
url() (in module owmeta.bibtex_customizations)
V
value_type (owmeta.neuroml.NeuroMLProperty attribute)
W
wbid (owmeta.document.Document attribute)
Website (class in owmeta.website)
Worm (class in owmeta.worm)
worm (owmeta.network.Network attribute)
WormAtlasCellListDataSource (class in owmeta.data_trans.wormatlas)
WormAtlasCellListDataTranslation (class in owmeta.data_trans.wormatlas)
WormAtlasCellListDataTranslator (class in owmeta.data_trans.wormatlas)
WormBaseCSVDataSource (class in owmeta.data_trans.wormbase)
wormbaseID (owmeta.channel.ExpressionPattern attribute)
wormbaseid (owmeta.channel.ExpressionPattern attribute)
(owmeta.document.Document attribute)
WormbaseIonChannelCSVDataSource (class in owmeta.data_trans.wormbase)
WormbaseIonChannelCSVTranslator (class in owmeta.data_trans.wormbase)
WormbaseRetrievalException
WormbaseTextMatchCSVDataSource (class in owmeta.data_trans.wormbase)
WormbaseTextMatchCSVTranslator (class in owmeta.data_trans.wormbase)
wormbaseURL (owmeta.channel.ExpressionPattern attribute)
write() (owmeta.my_neuroml.NeuroML class method)
Y
year (owmeta.document.Document attribute)
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